GgaEX1053616 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38463515-38473109:-
Coord C1 exon
chr2:38472949-38473109
Coord A exon
chr2:38470723-38470911
Coord C2 exon
chr2:38463515-38463630
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTTGCTGTTTTGTAGATA
3' ss Score
9.11
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTGGCTAAAATTTGAAGAGGATGTTGAAGATGGTGGTGATCGTTGGAGCAAGCCTTATGTAGCAACTCTGTCTCTACACAGTCTCTTTGAATTGCGAAGCTGTATTCTTAATGGGACGGTCATGTTGGACATGAGAGCAAACACACTAGATGAGATAGCAG
Seq A exon
ATATGGTCTTGGACAACATGATTGCTTCTGGCCAACTGGATGAATCGATAAGGGAGAATGTGAGAGTGGCACTTCTAAAAAGGCACCATCATCAAAATGAGAAAAAATTCAGCAATCGGATTCCCTTGGTTCGGTCTTTCGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAACGAAATG
Seq C2 exon
GGCTGTTAGCATCTCCTCAGTCAGCACCTGGAAATTTGGACAATGGGAAGAGTGGAGATGTTAAAGGTACTGGGACAGGTGGAAGCAGAGAAAACAGCACTGTTGATTTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'9-13,'9-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.087 C2=0.790
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(17.5=85.5)
A:
PF075658=Band_3_cyto=FE(23.5=100)
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGTTGAAGATGGTGGTGA
R:
GCTGTTTTCTCTGCTTCCACCT
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]