GgaEX1053616 @ galGal4
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39046951-39069851:-
Coord C1 exon
chr2:39069770-39069851
Coord A exon
chr2:39054159-39054347
Coord C2 exon
chr2:39046951-39047066
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTTGCTGTTTTGTAGATA
3' ss Score
9.11
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGTCATGATGAGGAAGCTGTCGTGGATATGGGCAAAATCAGCTCTACTATCAATACAAACTTTGAGAAAGAAGAACTAGAGA
Seq A exon
ATATGGTCTTGGACAACATGATTGCTTCTGGCCAACTGGATGAATCGATAAGGGAGAATGTGAGAGTGGCACTTCTAAAAAGGCACCATCATCAAAATGAGAAAAAATTCAGCAATCGGATTCCCTTGGTTCGGTCTTTCGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAACGAAATG
Seq C2 exon
GGCTGTTAGCATCTCCTCAGTCAGCACCTGGAAATTTGGACAATGGGAAGAGTGGAGATGTTAAAGGTACTGGGACAGGTGGAAGCAGAGAAAACAGCACTGTTGATTTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405_MULTIEX2-4/5=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=0.087 C2=0.785
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=FE(23.5=100)
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGGAAGCTGTCGTGGA
R:
AGTGCTGTTTTCTCTGCTTCCA
Band lengths:
178-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]