DreEX6042452 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42821834-42829325:-
Coord C1 exon
chr16:42829165-42829325
Coord A exon
chr16:42828891-42829079
Coord C2 exon
chr16:42821834-42821949
Length
189 bp
Sequences
Splice sites
3' ss Seq
AAATCCCTTTCGGTTCACAGACA
3' ss Score
6.87
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTGGCTGAAGTTTGAAGAGGATGTAGAGGATGGAGGAGAGCGCTGGAGTAAGCCTTACGTCGCCACACTTTCTTTGCACAGCCTGTTTGAGTTGCGCAGCTGCATTCTCAATGGCACAGTCATGCTGGACATGAGAGCAAACAGCATTGAGGAGATAGCAG
Seq A exon
ACATGGTATTAGACAACATGGTGGCATCAGAGCAGCTGGATGAGAGTGTAAGAGAAAAGGTACGAGACGCTGTGCTGAAAAGACACCATCACCAGAACGAGAAGAAGCTCAGCAATCGCATCCCGCTCGTGCGCTCCTTCGCCGACATAGGCAAGAAACATTCAGACCCGCACTTGCTTGAGAGGAATG
Seq C2 exon
GTCTTCTTGCGTCGCCCCAGTCGGCCCCGGGCATCCTGGAGAACAGTAAGTCCAGTGAAAGCCGAATAAATGGCACCGGTGGCAGCAGGGAAAATAGCACAGTGGACTTCAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952-'7-9,'7-5,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.241 C2=0.754
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(17.2=85.2)
A:
PF075658=Band_3_cyto=FE(23.1=100)
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGAGGATGGAGGAGAGCG
R:
TCTGCTGAAGTCCACTGTGCT
Band lengths:
256-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]