BtaEX6093214 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7826053-7831062:-
Coord C1 exon
chr22:7830919-7831062
Coord A exon
chr22:7827941-7828047
Coord C2 exon
chr22:7826053-7826206
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATTTGGTTCTTGTCCGTCAGGGT
3' ss Score
6.88
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GCAGCGCAGTCAGTCCTGATTTCCTTATTTGAACTCAATACCCCAGAGTTTACAATGTTATTAGGAGCTTTACCAAAAACTTTTCAGGATGGTGCTACCAAACTTCTTCATAATCACCTTCGAAACACTGGCAATGGAACCCAG
Seq A exon
GGTTCCATGGGAAGTCCTTTGACAAGACCAACACCACGGTCACCAGCCAACTGGTCCAGTCCTCTTACTTCTCCTACCAATACGTCGCAGAATACTTTATCTCCAAG
Seq C2 exon
TGCTTTTGATTATGACACAGAAAATATGAACTCTGAAGATATTTATAGCTCTCTTAGAGGTGTCACTGAAGCAATTCAGAATTTCAGCTTCCGTAGTCAAGAAGATATGAATGAACCATTGAAAAGAGATTCTAAAAAAGATGATGGCGATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333-'49-50,'49-49,50-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.188 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCAGTCAGTCCTGATTT
R:
TCTTCTTGACTACGGAAGCTGA
Band lengths:
248-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]