GgaEX0017988 @ galGal3
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44713574-44715077:-
Coord C1 exon
chr2:44714934-44715077
Coord A exon
chr2:44714398-44714504
Coord C2 exon
chr2:44713574-44713736
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTCATCTCTCCTCTACCAGGGT
3' ss Score
9.96
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCTGCACAGTCAGTACTCATTTCCCTTTTTGAACTTAATACTCCTGAGTTTACAATGCTGCTGGGTGCTTTACCAAAAACATTTCAGGATGGAGCCACAAAGCTTCTTCATAATCATCTCCGAAATACAGGCAACAGTGGTCAG
Seq A exon
GGTTCAATGGGAAGTCCTTTGACAAGACCTACTCCATGCTCCCCAGCAAGCTGGTCAAGTCCTCTCACTTCCCCAACCAATACATCGCAGAACACTTTGTCACCAAG
Seq C2 exon
TGCATTTGATTATGATACAGAAAACATGAATTCTGAAGATATTTACAGTTCTCTTCGCGGAGTCACTGAAGCTATTCAGAACTTCAGTTTCCGTAGTCAAGAAGATATGAATGAACCTGTGAAACGGGATTCAAAAAGAGATGATGTTGATTCAGTGAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-'58-64,'58-63,60-64
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.292 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACAATGCTGCTGGGTGCTT
R:
ACATCATCTCTTTTTGAATCCCGT
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]