GgaEX0017988 @ galGal4
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:RefSeq peptide;Acc:NP_001170856]
Coordinates
chr2:45258589-45283043:-
Coord C1 exon
chr2:45282980-45283043
Coord A exon
chr2:45266721-45266827
Coord C2 exon
chr2:45258589-45258795
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTCATCTCTCCTCTACCAGGGT
3' ss Score
9.96
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TCGTGTTGAGTTGAAAAGGCTGTGTGAAATCTTCACAAGAATGTTTGCTGATCCTCACAGTAAG
Seq A exon
GGTTCAATGGGAAGTCCTTTGACAAGACCTACTCCATGCTCCCCAGCAAGCTGGTCAAGTCCTCTCACTTCCCCAACCAATACATCGCAGAACACTTTGTCACCAAG
Seq C2 exon
GTGGTGAGATCTGCTGAAGAAGCTGCTTCCATGCTGGCCATTTCCATTAGCCCAGATCAGTGCATCAAAGTCCTTTGTCCAATTATCCAGACTGCAGACTACCCCATTAATCTGGCTGCAATCAAAATGCAGACAAAAGTCATAGAGAGAGTATCTAAAGAAACTCTTACTCAGCTTTTACCGGAGATTGTGCCAGGTTTAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995_MULTIEX2-5/11=C1-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(9.3=100)
A:
NO
C2:
PF102744=ParcG=PU(50.5=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTTGAGTTGAAAAGGCTGTG
R:
GGCACAATCTCCGGTAAAAGC
Band lengths:
257-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]