MmuEX6069514 @ mm9
Exon Skipping
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113808574-113813113:+
Coord C1 exon
chr9:113808574-113808717
Coord A exon
chr9:113810609-113810715
Coord C2 exon
chr9:113812960-113813113
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTCTTACTCCCTCCCTCAGAGT
3' ss Score
9.71
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GCAGCGCAGTCAGTGCTGATTTCTTTATTTGAACTCAATACCCCAGAGTTTACAATGTTACTAGGAGCTTTACCAAAAACTTTCCAGGATGGTGCTACTAAACTTCTTCACAATCACCTCCGGAACACTGGCAATGGCACCCAG
Seq A exon
AGTTCCATGGGGAGTCCTTTGACGAGACCAACACCTCGGTCACCAGCCAACTGGTCCAGTCCTCTTACTTCTCCTACCAACACGTCTCAGAATACGTTATCTCCAAG
Seq C2 exon
TGCATTTGATTACGATACAGAGAACATGAATTCTGAAGACATTTATAGCTCCCTTAGAGGCGTCACTGAGGCAATCCAGAATTTCAGCTTCAGAAGCCAAGAAGATATGAGTGAGCCAGTGAGGAGGGACCCTAAAAAGGAGGATGGTGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392-'46-48,'46-47,47-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.350 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=PD(15.9=75.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAACTCAATACCCCAGAGT
R:
CCTCCTCACTGGCTCACTCAT
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: