RnoEX0021493 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122161039-122166245:+
Coord C1 exon
chr8:122161039-122161182
Coord A exon
chr8:122163420-122163526
Coord C2 exon
chr8:122166092-122166245
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTCTTTACTCCCACCCTCAGAGT
3' ss Score
9.27
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCAGCACAGTCGGTGCTGATTTCTTTGTTTGAACTCAATACCCCAGAGTTTACAATGTTACTAGGAGCTTTACCAAAAACTTTCCAGGATGGTGCTACTAAACTTCTTCACAATCACCTTCGAAACACTGGCAATGGCACTCAG
Seq A exon
AGTTCCATGGGGAGTCCTTTGACGAGACCAACACCTCGGTCACCAGCCAACTGGTCCAGTCCTCTTACTTCTCCTACCAACACGTCACAGAATACGTTATCTCCAAG
Seq C2 exon
TGCATTTGATTACGACACAGAGAACATGAATTCTGAAGACATTTACAGCTCCCTTAGAGGTGTCACTGAGGCAATCCAGAATTTCAGCTTCAGAAGCCAGGAAGACATGAGTGAGCCGCTGAAGAGGGACCCTAAGAAAGAGGATGGTGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161-'62-64,'62-63,63-64
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=PD(15.9=75.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCGGTGCTGATTTCTTTGT
R:
GCTCACTCATGTCTTCCTGGC
Band lengths:
255-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]