BtaEX6093374 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11719631-11731235:+
Coord C1 exon
chr22:11719631-11719686
Coord A exon
chr22:11728296-11728405
Coord C2 exon
chr22:11731134-11731235
Length
110 bp
Sequences
Splice sites
3' ss Seq
GCTGTTATATTCTGTTTTAGACT
3' ss Score
9.27
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGATGTGAAAGCTGGCAATATTCTTCTTGGAGAAGATGGCTCGGTACAGATTGCAG
Seq A exon
ACTTTGGAGTTAGTGCTTTTTTAGCAACTGGTGGTGACATTACTCGGAATAAAGTGAGAAAAACCTTTGTTGGAACACCTTGCTGGATGGCGCCTGAAGTTATGGAACAG
Seq C2 exon
GTTCGTGGTTATGATTTTAAAGCTGACATCTGGAGTTTTGGGATCACAGCCATTGAACTGGCCACGGGGGCAGCTCCTTACCATAAGTACCCACCGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927-'10-11,'10-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(12.2=90.0)
A:
PF0006920=Pkinase=FE(13.1=100)
C2:
PF0006920=Pkinase=FE(12.0=100)
Main Skipping Isoform:
ENSBTAT00000019872fB4948
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTGAAAGCTGGCAATATTCT
R:
TCATCGGTGGGTACTTATGGT
Band lengths:
156-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]