MmuEX6069725 @ mm9
Exon Skipping
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119176261-119182102:-
Coord C1 exon
chr9:119182047-119182102
Coord A exon
chr9:119177798-119177907
Coord C2 exon
chr9:119176261-119176362
Length
110 bp
Sequences
Splice sites
3' ss Seq
TACTGTCTGCTCTCTTTCAGATT
3' ss Score
11.47
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGATGTGAAAGCTGGAAACATTCTTCTAGGAGAAGACGGCTCTGTGCAGATTGCAG
Seq A exon
ATTTCGGCGTCAGTGCTTTTTTAGCCACTGGTGGTGACATTACCAGAAATAAAGTGAGAAAAACGTTTGTTGGCACCCCGTGCTGGATGGCACCCGAAGTTATGGAGCAG
Seq C2 exon
GTTCGAGGTTATGATTTTAAAGCTGATATTTGGAGTTTTGGAATCACTGCGATTGAACTGGCCACAGGGGCAGCTCCTTATCATAAATATCCACCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(6.9=100)
A:
PF0006920=Pkinase=FE(13.1=100)
C2:
PF0006920=Pkinase=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTGAAAGCTGGAAACATTCT
R:
ATTGGTGGATATTTATGATAAGGAGC
Band lengths:
154-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: