RnoEX0062802 @ rn6
Exon Skipping
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127956550-127962136:-
Coord C1 exon
chr8:127962081-127962136
Coord A exon
chr8:127958849-127958958
Coord C2 exon
chr8:127956550-127956651
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCTCTGCTGTTTCAGATT
3' ss Score
11.59
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGATGTGAAAGCTGGGAACATTCTTCTAGGAGAAGACGGCTCTGTGCAGATTGCAG
Seq A exon
ATTTCGGTGTTAGTGCTTTTTTAGCCACTGGTGGTGACATTACCAGAAATAAAGTAAGAAAGACGTTTGTTGGCACCCCGTGCTGGATGGCACCTGAAGTTATGGAGCAG
Seq C2 exon
GTTCGAGGTTATGATTTTAAAGCTGATATCTGGAGTTTTGGAATCACAGCGATTGAACTAGCCACAGGGGCAGCTCCTTATCATAAATATCCTCCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(6.9=100)
A:
PF0006920=Pkinase=FE(13.1=100)
C2:
PF0006920=Pkinase=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTGAAAGCTGGGAACAT
R:
GGATATTTATGATAAGGAGCTGCCCC
Band lengths:
148-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]