DreEX6094685 @ danRer10
Exon Skipping
Gene
ENSDARG00000027500 | oxsr1b
Description
oxidative stress responsive 1b [Source:ZFIN;Acc:ZDB-GENE-040426-723]
Coordinates
chr24:19938653-19943320:-
Coord C1 exon
chr24:19943265-19943320
Coord A exon
chr24:19942089-19942198
Coord C2 exon
chr24:19938653-19938754
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTCATATCTGTAGATT
3' ss Score
9.93
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGATCTTAAAGCTGGAAACATCCTGCTGGGAGAAGATGGATCAGTGCAAATCGCAG
Seq A exon
ATTTCGGTGTAAGTGCCTTCTTAGCCACCGGTGGTGACATGACTCGAAATAAAGTGCGCAAGACGTTTGTGGGGACGCCATGTTGGATGGCTCCAGAGGTGATGGAGCAG
Seq C2 exon
GTCAAAGGTTACGACTTCAAAGCAGACATCTGGAGTTTTGGGATCACAGCCATTGAACTGGCCACAGGCGCAGCTCCGTACCACAAATACCCTCCGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027500-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(6.9=100)
A:
PF0006920=Pkinase=FE(13.1=100)
C2:
PF0006920=Pkinase=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTTAAAGCTGGAAACATCCTG
R:
CATCGGAGGGTATTTGTGGTACG
Band lengths:
155-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]