GgaEX1041651 @ galGal4
Exon Skipping
Gene
ENSGALG00000005979 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr2:4882170-4894334:+
Coord C1 exon
chr2:4882170-4882225
Coord A exon
chr2:4890784-4890893
Coord C2 exon
chr2:4894233-4894334
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGCTTTCTTTACAGACT
3' ss Score
10.19
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGATGTGAAAGCAGGAAACATTCTTCTTGGAGAAGATGGCTCAGTGCAAATTGCAG
Seq A exon
ACTTTGGCGTTAGTGCTTTTTTGGCCACTGGTGGTGACATTACCAGAAATAAAGTCAGGAAAACATTTGTAGGCACACCTTGCTGGATGGCACCAGAAGTTATGGAACAG
Seq C2 exon
GTCAGAGGATACGATTTCAAGGCAGACATCTGGAGCTTTGGGATCACTGCTATCGAACTGGCTACAGGGGCAGCTCCTTATCATAAATACCCCCCGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(6.9=100)
A:
PF0006920=Pkinase=FE(13.1=100)
C2:
PF0006920=Pkinase=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTGAAAGCAGGAAACATTCT
R:
GGTATTTATGATAAGGAGCTGCCCC
Band lengths:
147-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]