BtaEX6093485 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017174 | SCN11A
Description
sodium channel, voltage gated, type XI alpha subunit [Source:HGNC Symbol;Acc:HGNC:10583]
Coordinates
chr22:12297718-12299285:-
Coord C1 exon
chr22:12299184-12299285
Coord A exon
chr22:12298445-12298714
Coord C2 exon
chr22:12297718-12297771
Length
270 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTTTGTTTCCTTAAGGTG
3' ss Score
9.26
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTCTCTGTGACCAGTCTCATCGACTTAATGGGCTTGAAGTCCTTCCGGATTCTTCGAGCACTGAGGCCCCTGCGAGCACTGTCCCAGTTTGAAGGAATGAAG
Seq A exon
GTGGTAGTTTATGCTCTCATAGGTGCCATACCTGCTATTCTGAATGTTTTGCTTGTCTGCCTCATTTTCTGGCTCATATTTTGTATCCTGGGAGTAAGTCTGTTTTCTGGAAGATTTGGAAGATGTGTTAATGCAACAGATGTAAAATCAGTTATAGATTATAACATTGTTGCAAACCGTAATCAATGTGAAAGTGGACATTTCTATTGGGACACCCCGGATGTCAACTTTGACAACGTGTTAATGGCTTACCTTGCGCTACTGCAAGTG
Seq C2 exon
GCAACATTTAAGGGCTGGATGGATATTATGTATGCAGCTGTTGATTCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017174-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(15.1=100)
A:
PF0052026=Ion_trans=FE(40.8=100)
C2:
PF0052026=Ion_trans=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTGTGACCAGTCTCATCG
R:
CTCTGTGGAATCAACAGCTGCA
Band lengths:
156-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]