GgaEX1051149 @ galGal4
Exon Skipping
Gene
ENSGALG00000027702 | SCN11A
Description
sodium channel, voltage gated, type XI alpha subunit [Source:HGNC Symbol;Acc:HGNC:10583]
Coordinates
chr2:5327499-5331084:+
Coord C1 exon
chr2:5327499-5327573
Coord A exon
chr2:5329951-5330205
Coord C2 exon
chr2:5331031-5331084
Length
255 bp
Sequences
Splice sites
3' ss Seq
ATTCATTTTATTTATTTAAGGTT
3' ss Score
7.58
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGTGCCCTGAAGTCTCTCAGGACGCTCCGAGCACTGAGGCCTCTACGAGCACTGTCAAGATTTGAAGGGATAAAG
Seq A exon
GTTGTTGTGAATGCACTTTTGGGAGCTATCCCCTCGATCTTGAACGTTTTACTCGTCTGTGTTGTCTTCTGGCTCCTGTTTAACATTGTAGGAGTAAAACTACTTGGACAAAAATTTTGGAAATGCGTGCTTAAGACAGGAGATAACAGAGAAGTTCAGAACATAAATGACTGTAGGAATTATGGTGGAAAATGGACAAACAGTTATGTAAATTTTGATCATGTTGGGATGGGATACTTGGCTCTTCTCCAGGTG
Seq C2 exon
GCAACTTTTAAAGGCTGGATGGACATTATGTATGCAGCAGTGGATGCGCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027702-'24-25,'24-23,25-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(10.9=100)
A:
PF0052026=Ion_trans=FE(38.2=100)
C2:
PF0052026=Ion_trans=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]