BtaEX6093939 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21801776-21809911:-
Coord C1 exon
chr22:21809757-21809911
Coord A exon
chr22:21803283-21803382
Coord C2 exon
chr22:21801776-21801936
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTTCTTCCCTTTAGAAA
3' ss Score
11.75
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTGGACCCTGATCAGGATGCCTCCCGAAGCAGGTTGCGAAATGCCCAAGAGAAGATGGTGTACTCCCTGGTCTCTGTGCCCGAGGGCAATGACATCTCCTCCATTTTTGAGCTGGACCCCACGACGCTCCGTGGAGGCGACAGCCTCGTCCCGAG
Seq A exon
AAACTCCTATGTCCGGCTCCGACACCTGTGTACAAATACCTGGGTTCACAGCACAAACATCCCCATTGACAAGGAAGAAGAAAAACCCGTGATGCTGAAA
Seq C2 exon
ATTGGCACTTCTCCCGTGAAGGAGGACAAGGAAGCCTTTGCCATAGTGCCAGTCTCTCCTGCTGAGGTTCGGGATCTGGACTTTGCCAATGACGCCAGCAAGGTGCTGGGCTCCATAGCGGGCAAGTTGGAGAAGGGCACCATCACCCAGAATGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'11-13,'11-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.206 C2=0.056
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(25.2=100)
A:
PF0281514=MIR=FE(16.3=100)
C2:
PF0281514=MIR=PD(7.4=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACTCCCTGGTCTCTGTGC
R:
GTGATGGTGCCCTTCTCCAAC
Band lengths:
243-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]