DreEX0040320 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35683289-35700496:-
Coord C1 exon
chr11:35700342-35700496
Coord A exon
chr11:35685180-35685279
Coord C2 exon
chr11:35683289-35683449
Length
100 bp
Sequences
Splice sites
3' ss Seq
ACCAATTGTTTGCTTCTCAGGAA
3' ss Score
8.19
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
CTGGACTCTGAACATGAGGCTCTGCGAGCTCGTCTGCGCACGCCCAATGAGAAGGTCATGTACTCACTGGTGTCTGTGCCTGATGGCAATGACATTTCCTCTATATTTGAGCTGGACCCCACCACTCTCAGAGGAGGAGACTCACTCGTGCCCAG
Seq A exon
GAACTCGTATGTGAGATTGAGGCACTTGTGCACCAACACATGGGTCCACAGCACCAACAACCCCATTGACAAAGAGGAGGAGAAGCCGGTTATGCTGCGT
Seq C2 exon
ATCGGCACGTCTGCCGTCAAAGAAGATAAAGAGGCCTTCGCCATTGTGCCAGTTCCTCCTGCAGAGGTGAGGGATCTGGACTTTGCTAATGATGCCAGTAAAGTGTTGGCATCCATCGCTGGCAAGCTAGAGAAGGGCACAATCACCCAGAATGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'15-14,'15-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.382 C2=0.037
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(24.1=100)
A:
PF0281514=MIR=FE(15.6=100)
C2:
PF0281514=MIR=PD(7.1=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCACTGGTGTCTGTGCCT
R:
CTGGGTGATTGTGCCCTTCTC
Band lengths:
245-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]