RnoEX6014542 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140401963-140411036:+
Coord C1 exon
chr4:140401963-140402117
Coord A exon
chr4:140409750-140409849
Coord C2 exon
chr4:140410876-140411036
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTTCAATGCTTCCCTGCAGGAA
3' ss Score
11.32
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGGACCCTGATCAGGACGCATCTCGGAGCAGGTTGAGAAATGCCCAAGAAAAAATGGTGTACTCTCTGGTCTCTGTGCCTGAGGGCAACGACATCTCCTCCATCTTTGAGCTAGACCCCACAACTCTACGTGGAGGTGACAGCCTTGTCCCAAG
Seq A exon
GAACTCCTATGTCCGGCTCAGACACCTGTGTACAAACACCTGGGTTCACAGCACAAACATCCCCATTGACAAGGAAGAGGAAAAACCTGTCATGCTGAAG
Seq C2 exon
ATTGGTACCTCTCCCCTGAAGGAGGACAAGGAAGCTTTTGCCATAGTCCCCGTTTCTCCTGCTGAGGTTCGGGACCTGGACTTTGCCAATGATGCCAGCAAGGTGCTGGGCTCCATCGCTGGGAAGTTGGAAAAGGGCACCATCACCCAGAATGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'27-23,'27-22,28-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.187 A=0.200 C2=0.037
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(25.2=100)
A:
PF0281514=MIR=FE(16.3=100)
C2:
PF0281514=MIR=PD(7.4=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGGTCTCTGTGCCTGAG
R:
CTCATTCTGGGTGATGGTGCC
Band lengths:
248-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]