GgaEX0012000 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19079063-19080237:+
Coord C1 exon
chr12:19079063-19079217
Coord A exon
chr12:19079862-19079961
Coord C2 exon
chr12:19080077-19080237
Length
100 bp
Sequences
Splice sites
3' ss Seq
AACTTCTGACTTTCTTTTAGGAA
3' ss Score
9.3
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CAGGACCCTGAGCAGGATGCCTCCAGAAGAGGCCTGCGCAGCGCTCAGGAGAAGATGGCGTACTCTCTGGTGTCTGTGCCTGAAGGAAATGATATCTCCTCCATATTCGAGTTGGACCCCACCACCCTGCGAGGAGGAGACAGCCTTGTCCCCAG
Seq A exon
GAACTCTTATGTCAGACTTAGACACCTTTGCACTAACACCTGGGTTCATAGTACAAATATCCCTATTGATAAAGAAGAAGAGAAACCTGTGATGCTTAAG
Seq C2 exon
ATTGGTACTTCTCCAGTAAAAGAGGACAAAGAAGCTTTTGCTATAGTACCAGTTTCTCCTGCAGAGGTTCGGGACTTGGACTTTGCAAACGATGCAAGTAAGGTCTTAGGTTCCATTGCTGGCAAACTGGAAAAGGGAACAATAACCCAGAATGAAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'14-15,'14-14,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.235 C2=0.111
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(25.2=100)
A:
PF0281514=MIR=FE(16.3=100)
C2:
PF0281514=MIR=PD(7.4=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGGAGAAGATGGCGTAC
R:
TCCAGTTTGCCAGCAATGGAA
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]