DreEX6023193 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39947805-39948384:+
Coord C1 exon
chr6:39947805-39947959
Coord A exon
chr6:39948043-39948142
Coord C2 exon
chr6:39948224-39948384
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTTGGATTGTGCTTGTTAGAAA
3' ss Score
4.09
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
ATGGATTCGGAGCATGAAGTGATTCGGGCTCGTGCACGTAACCCTCAGGATAAGGTGATGTACACACTGGTGTCTGTTCCTGATGGAAATGACATATCCTCCATCTTTGAGCTTGACCCTACAACTTTGAGGGGCGGAGACTCACTTGTGCCAAG
Seq A exon
AAACTCGTATGTGAGGCTCAGGCATCTCTGCACCAACACGTGGGTCCACAGCACCAACCAGCCAATAGATAAAGAGGAAGAGAAACCGGTCATGCTCAGA
Seq C2 exon
ATAGGAACGTCTCCTCTGAAGGAAGATAAAGAGGCGTTTGCTATAGTACCAGTCTCTCCAGCTGAGGTTCGAGATCTGGATTTTGCTAATGATGCTAGTAAAGTGTTGGCTTCCATTGCTGCCAAACTGGAGAAGGGCACCATTACCCAGAATGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=0.471 C2=0.037
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(25.4=100)
A:
PF0281514=MIR=FE(16.4=100)
C2:
PF0281514=MIR=PD(7.5=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGCACGTAACCCTCAG
R:
CAGTTTGGCAGCAATGGAAGC
Band lengths:
256-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]