GgaEX1030906 @ galGal3
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4461999-4462807:-
Coord C1 exon
chr26:4462665-4462807
Coord A exon
chr26:4462433-4462532
Coord C2 exon
chr26:4461999-4462159
Length
100 bp
Sequences
Splice sites
3' ss Seq
AGGCGCGGTGCCGTTTGCAGGAA
3' ss Score
7.58
5' ss Seq
ATGGTGCGG
5' ss Score
5.75
Exon sequences
Seq C1 exon
GGGGGGAGCAGCCGCTCCAGCCGCAGGAACACCGGGGAGAAGATCAAGTACCGGCTGGTGGCCGTGCCTCACGGGAACGACATCGCCTCCCTCTTCGAGCTGGACCCCACCACGCTGCAGAAGACGGATTCCTTCGTCCCGCG
Seq A exon
GAATTCGTACGTGCGGCTTCGCCACCTCTGCACCAACACCTGGATCCAGAGCACCAACGTGCCCATTGACATTGACGAGGAGAGACCCATCCGCCTCATG
Seq C2 exon
CTGGGCACGTGTCCCACCAAAGAAGACAAAGAAGCATTTGCCATTGTCTCCGTGCCTGTGTCTGAGATCCGGGACCTGGACTTTGCCAACGATGCCAGCTCAATGCTGGCCAACGTGGTGGAGAAGATGAACGAAGGTTTTCTTAGCCAGAATGACCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.029 C2=0.037
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.5=100)
A:
PF0281514=MIR=FE(16.5=100)
C2:
PF0281514=MIR=PD(7.5=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCGGGGAGAAGATCAAGT
R:
CATCTTCTCCACCACGTTGGC
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]