MmuEX6076259 @ mm9
Exon Skipping
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27226775-27228598:+
Coord C1 exon
chr17:27226775-27226917
Coord A exon
chr17:27228256-27228355
Coord C2 exon
chr17:27228438-27228598
Length
100 bp
Sequences
Splice sites
3' ss Seq
GGCTGTGTCCTCTCACCTAGGAA
3' ss Score
8.89
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGGGCCCAGGGCCGCACTGGCCGCAGGAACGCAGGCGAGAAGATCAAGTACCGTCTGGTGGCTGTGCCACATGGGAATGACATCGCGTCTCTCTTCGAGCTGGACCCCACCACGCTGCAGAAAACCGACTCCTTCGTGCCCCG
Seq A exon
GAACTCCTACGTGCGGCTGCGGCACCTCTGCACCAACACCTGGATCCAGAGTACCAACGCGCCCATCGACGTGGAGGAGGAACGGCCTATCCGGCTCATG
Seq C2 exon
TTGGGCACATGCCCCACCAAGGAGGACAAAGAGGCCTTTGCCATTGTGTCGGTTCCTGTGTCGGAGATCCGCGACCTGGACTTTGCCAACGACGCCAGCTCCATGCTGGCCAGCGCCGTGGAGAAACTCAACGAAGGCTTCATCAGCCAGAACGACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.059 C2=0.037
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.5=100)
A:
PF0281514=MIR=FE(16.5=100)
C2:
PF0281514=MIR=PD(7.5=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGCAGGCGAGAAGATCAA
R:
TTCGTTGAGTTTCTCCACGGC
Band lengths:
252-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: