RnoEX6061826 @ rn6
Exon Skipping
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5678576-5680280:+
Coord C1 exon
chr20:5678576-5678718
Coord A exon
chr20:5679920-5680019
Coord C2 exon
chr20:5680120-5680280
Length
100 bp
Sequences
Splice sites
3' ss Seq
GGCTGTGTCCTCTCGCCCAGGAA
3' ss Score
7.72
5' ss Seq
ATGGTACGG
5' ss Score
8.21
Exon sequences
Seq C1 exon
GGGGCCCAGAGCCGCACAGGCCGCAGAAACGCCGGCGAGAAGATCAAGTACCGTCTGGTGGCTGTGCCACATGGCAACGACATCGCGTCTCTCTTCGAGCTGGACCCCACCACGCTGCAGAAAACCGACTCCTTCGTGCCCCG
Seq A exon
GAACTCCTACGTGCGGCTGCGGCACCTCTGTACCAACACCTGGATCCAGAGCACGAACGCGCCCATCGACGTGGAGGAGGAACGGCCTATCCGGCTCATG
Seq C2 exon
TTGGGCACGTGCCCCACCAAGGAGGACAAGGAGGCCTTTGCCATTGTGTCGGTTCCCGTGTCTGAGATCCGCGACCTGGACTTTGCCAACGATGCAAGCTCCATGCTGGCCAGCGCTGTGGAGAAACTCAACGAGGGCTTCATCAGCCAGAACGACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.088 C2=0.037
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.5=100)
A:
PF0281514=MIR=FE(16.5=100)
C2:
PF0281514=MIR=PD(7.5=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGCGAGAAGATCAAGTAC
R:
TCGTTGAGTTTCTCCACAGCG
Band lengths:
247-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]