BtaEX6097007 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7722091-7723435:+
Coord C1 exon
chr23:7722091-7722233
Coord A exon
chr23:7723097-7723196
Coord C2 exon
chr23:7723275-7723435
Length
100 bp
Sequences
Splice sites
3' ss Seq
CCGGCCCTGGCCCGCTGCAGGAA
3' ss Score
6.15
5' ss Seq
ATGGTGCGG
5' ss Score
5.75
Exon sequences
Seq C1 exon
GGTGCGCAGGGCCGCACAGGTCGCCGGAACGCTGGGGAGAAGATCAAGTACCGCCTGGTGGCTGTGCCCCACGGCAACGACATCGCTTCCCTCTTCGAGCTGGACCCCACCACGCTGCAGAAGACCGACTCCTTCGTGCCCCG
Seq A exon
GAACTCCTACGTCCGGCTGCGGCACCTGTGCACCAACACTTGGATCCAGAGCACCAACGTGCCCATTGATGTCGAGGAGGAGCGGCCCATCCGACTCATG
Seq C2 exon
CTGGGCACCTGCCCCACCAAGGAGGACAAGGAGGCCTTCGCCATCGTGTCGGTTCCCGTGTCCGAGATCCGAGACCTGGACTTCGCCAACGACGCCAGCTCCATGCTGGCCAGCGCCGTGGAGAAGCTGCACGAGGGCTTCATCAGCCAGAATGACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.029 C2=0.037
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.5=100)
A:
PF0281514=MIR=FE(16.5=100)
C2:
PF0281514=MIR=PD(7.5=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAAGATCAAGTACCGCC
R:
CTGATGAAGCCCTCGTGCAG
Band lengths:
255-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]