DreEX6049581 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21265111-21268154:+
Coord C1 exon
chr8:21265111-21265250
Coord A exon
chr8:21265362-21265461
Coord C2 exon
chr8:21267994-21268154
Length
100 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTCACTGCCTACAGAAA
3' ss Score
8.05
5' ss Seq
ATGGTGAAA
5' ss Score
0.56
Exon sequences
Seq C1 exon
GTGGACAGCAGTCGTATCAAGAGAAGCCTTGGAGAAAGGATTAAATATAAGCTAGTCGCAGTGCCTCATGGGAACGACATCGCCTCTCTGTTTGAGCTGGACCCGACAACACTGCAGAAGACTGATTCATTTGTGCCAAG
Seq A exon
AAATTCTTATGTTCGATTTCGCCACCTGTGCACGAACACTTGGATCCAAAGCACCAACATTCCTATCGACATCGATGAAGAGCGGCCGATTCGATTAATG
Seq C2 exon
CTGGGCACGTGCCCCACTAAAGAGGACAAAGAAGCATTCGCCATCGTCTCTGTGCCGGTCATGGAGATTCGAGATCTAGACTTCGCCAATGATGCGAGTCTCATGTTGAGCACTGTTGTCGAGAAGTTCAAATACGGTTTTCTCAGTCCTAATGACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.6=100)
A:
PF0281514=MIR=FE(37.5=100)
C2:
PF0281514=MIR=PD(17.0=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACAGCAGTCGTATCAAGA
R:
GAGACTCGCATCATTGGCGAA
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]