HsaEX6046711 @ hg38
Exon Skipping
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33663738-33665213:+
Coord C1 exon
chr6:33663738-33663880
Coord A exon
chr6:33664870-33664969
Coord C2 exon
chr6:33665053-33665213
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCCACCCACCTGCAGGAA
3' ss Score
11.23
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGGGCACAGGGCCGCACAGGCCGCAGGAATGCTGGGGAGAAGATCAAGTACTGCCTGGTGGCTGTGCCTCATGGCAATGACATCGCCTCTCTCTTTGAGCTGGACCCCACCACCTTGCAGAAAACCGACTCTTTCGTGCCCCG
Seq A exon
GAACTCGTACGTCCGGCTGCGGCACCTCTGCACCAACACGTGGATTCAGAGCACCAATGTGCCCATTGACATCGAGGAGGAGCGGCCCATCCGGCTCATG
Seq C2 exon
CTGGGCACCTGCCCCACCAAGGAGGACAAGGAGGCCTTTGCCATCGTGTCAGTGCCCGTGTCTGAGATCCGAGACCTGGACTTTGCCAATGACGCCAGCTCCATGCTGGCCAGTGCCGTGGAGAAACTCAACGAGGGCTTCATCAGCCAGAATGACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-'35-43,'35-41,37-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.029 C2=0.037
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.5=100)
A:
PF0281514=MIR=FE(16.5=100)
C2:
PF0281514=MIR=PD(7.5=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATGCTGGGGAGAAGATCA
R:
CCTCGTTGAGTTTCTCCACGG
Band lengths:
255-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains