Special

BtaEX6093967 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21657691-21669371:-
Coord C1 exon
chr22:21669249-21669371
Coord A exon
chr22:21662228-21662403
Coord C2 exon
chr22:21657691-21657855
Length
176 bp
Sequences
Splice sites
3' ss Seq
GCTCTGCCTCCTGGTTGCAGGGA
3' ss Score
8.18
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
CCCAGCCCGTCCTGTACTGGTGCGCCCGCAACATGTCTTTCTGGAGTAGCATTTCATTCAACCTGGCCGTCCTGATGAACCTGCTTGTGGCGTTTTTCTACCCTTTTAAAGGAGTCCGAGGAG
Seq A exon
GGACCCTGGAACCGCACTGGTCGGGACTGCTGTGGACGGCCATGCTCATCTCTCTGGCCATCGTCATCGCCCTCCCCAAGCCCCATGGCATCCGGGCCTTAATCGCTTCCACGATTCTCCGGTTGATATTTTCCGTCGGGCTACAACCCACGCTGTTTCTTTTGGGAGCTTTCAAC
Seq C2 exon
GTCTGCAATAAAATCATTTTTCTGATGAGCTTTGTGGGCAACTGTGGGACATTCACCAGAGGCTACCGGGCCATGGTTCTGGATGTTGAGTTCCTTTATCACCTGCTATACCTGCTGATCTGCGCCATGGGGCTCTTCGTCCATGAGTTCTTCTACAGTTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'62-65,'62-64,66-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
PF0052026=Ion_trans=PU(10.9=47.5)
C2:
PF0052026=Ion_trans=FE(21.0=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCAACATGTCTTTCTGGA
R:
GAACTCATGGACGAAGAGCCC
Band lengths:
249-425
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]