RnoEX6014522 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140530014-140541855:+
Coord C1 exon
chr4:140530014-140530136
Coord A exon
chr4:140536321-140536496
Coord C2 exon
chr4:140541691-140541855
Length
176 bp
Sequences
Splice sites
3' ss Seq
AGTCTATGCTGTCTTTCCAGGAA
3' ss Score
8.29
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CCCAGCCTGTCTTGTACTGGTGCGCCCGAAACATGTCTTTCTGGAGCAGCATCTCCTTCAACCTGGCCGTCCTGATGAACCTGCTGGTGGCGTTTTTCTACCCATTTAAAGGAGTGAGAGGAG
Seq A exon
GAACACTAGAGCCGCACTGGTCCGGCCTCCTGTGGACAGCCATGCTCATCTCTCTGGCAATTGTCATTGCGCTGCCCAAGCCCCATGGCATCCGGGCCTTAATTGCTTCTACAATCCTACGACTGATATTTTCAGTTGGATTACAGCCCACACTGTTTCTGCTGGGAGCTTTCAAT
Seq C2 exon
GTCTGCAATAAAATCATCTTCCTGATGAGCTTTGTGGGCAACTGTGGGACCTTCACCAGAGGCTACCGAGCCATGGTTCTGGACGTTGAGTTCCTCTATCATTTGCTGTATCTACTGATCTGTGCCATGGGCCTCTTCGTACATGAGTTTTTCTATAGTTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'88-91,'88-89,89-91=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(10.9=47.5)
C2:
PF0052026=Ion_trans=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCCGAAACATGTCTTTCT
R:
ACTCATGTACGAAGAGGCCCA
Band lengths:
250-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]