Special

GgaEX0012014 @ galGal3

Exon Skipping

Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19149252-19159411:+
Coord C1 exon
chr12:19149252-19149356
Coord A exon
chr12:19156387-19156562
Coord C2 exon
chr12:19159216-19159411
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTTCTTTGTCCTAGGTA
3' ss Score
11.04
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TTGGCTCGTCACAACAAAGAGCTGCAGAACATGCTGAAGCCAGGAGGTCAGATTGAGGGAGACGAGGCTCTGGAGTTCTATGCCAAGCACACGGCACAGATTGAG
Seq A exon
GTACTTTGGAGCCCCACTTGTCAGGCTTGCTGTGGACAGCTATGCTGATTTCTCTGGCTATAGTCATTGCTCTTCCTAAGCCCCACGGCATCCGAGCCTTAATAGCTTCTACAATATTACGACTAATATTTTCAGTTGGTTTACAACCTACTTTATTTCTTCTGGGTGCATTCAAC
Seq C2 exon
CTCTTTGACTTGGTGTACCGAGAGGAGACCTTGCTGAACGTCATCAAGAGTGTCACCCGCAATGGGCGCTCCATCATCCTGACCGCTGTGCTCGCGCTCATCCTCGTGTACCTGTTCTCCATAGTGGGGTACCTGTTCTTCAAAGATGACTTTATCCTGGAAGTAGACAAGCTCCCCAATGAAACGTTATTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-3/4=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.114 A=0.000 C2=0.030
Domain overlap (PFAM):

C1:
NO
A:
PF0052026=Ion_trans=PU(10.4=45.8)
C2:
PF0052026=Ion_trans=FE(25.1=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGAGGGAGACGAGGCTCT
R:
ACGTTTCATTGGGGAGCTTGT
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]