Special

GgaEX0012014 @ galGal4

Exon Skipping

Gene
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18509650-18513708:+
Coord C1 exon
chr12:18509650-18509772
Coord A exon
chr12:18512078-18512253
Coord C2 exon
chr12:18513544-18513708
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTTCTTTGTCCTAGGTA
3' ss Score
11.04
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
CTCAGCCTTTCCTGTACTGGTGTGCTCGCAACATGTCCTTCTGGAGCAGTATTTCCTTTAACCTGGCTGTCCTCATGAACCTGCTGGTAGCATTTTTCTACCCATTCAAAGGAATTCGAGGAG
Seq A exon
GTACTTTGGAGCCCCACTTGTCAGGCTTGCTGTGGACAGCTATGCTGATTTCTCTGGCTATAGTCATTGCTCTTCCTAAGCCCCACGGCATCCGAGCCTTAATAGCTTCTACAATATTACGACTAATATTTTCAGTTGGTTTACAACCTACTTTATTTCTTCTGGGTGCATTCAAC
Seq C2 exon
GTTTGTAATAAAATCATTTTTCTGATGAGTTTTGTGGGTAACTGTGGGACCTTCACTAGAGGATACAAGGCCATGATCATGGACGTAGAATTTCTGTATCATCTGCTGTACCTCCTGATCTGTGCTCTGGGGCTCTTTGTACACGAATTCTTCTATAGTTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'71-78,'71-77,72-78
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
PF0052026=Ion_trans=PU(10.4=45.8)
C2:
PF0052026=Ion_trans=FE(20.8=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACATGTCCTTCTGGAGCA
R:
TCGTGTACAAAGAGCCCCAGA
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]