BtaEX6093968 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21651754-21662403:-
Coord C1 exon
chr22:21662228-21662403
Coord A exon
chr22:21657691-21657855
Coord C2 exon
chr22:21651754-21651949
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTGGCTGTCATTGTTTTCAGGTC
3' ss Score
9.86
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGACCCTGGAACCGCACTGGTCGGGACTGCTGTGGACGGCCATGCTCATCTCTCTGGCCATCGTCATCGCCCTCCCCAAGCCCCATGGCATCCGGGCCTTAATCGCTTCCACGATTCTCCGGTTGATATTTTCCGTCGGGCTACAACCCACGCTGTTTCTTTTGGGAGCTTTCAAC
Seq A exon
GTCTGCAATAAAATCATTTTTCTGATGAGCTTTGTGGGCAACTGTGGGACATTCACCAGAGGCTACCGGGCCATGGTTCTGGATGTTGAGTTCCTTTATCACCTGCTATACCTGCTGATCTGCGCCATGGGGCTCTTCGTCCATGAGTTCTTCTACAGTTTGCTG
Seq C2 exon
CTTTTTGATTTAGTGTACAGAGAAGAGACTCTGCTCAATGTCATTAAAAGCGTCACTCGCAACGGCCGGTCCATCATCTTGACGGCGGTTCTGGCTTTGATCCTGGTTTACCTGTTCTCCATAGTGGGCTACCTTTTCTTCAAAGATGACTTCATCTTGGAAGTAGATAGGCTGCCCAATGAAACCTCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'66-66,'66-65,67-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(10.9=47.5)
A:
PF0052026=Ion_trans=FE(21.0=100)
C2:
PF0052026=Ion_trans=FE(25.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCTGGCCATCGTCATCG
R:
AGCCCACTATGGAGAACAGGT
Band lengths:
258-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]