GgaEX0012015 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18512078-18515140:+
Coord C1 exon
chr12:18512078-18512253
Coord A exon
chr12:18513544-18513708
Coord C2 exon
chr12:18514945-18515140
Length
165 bp
Sequences
Splice sites
3' ss Seq
TATGCTTCATCTTTCCTTAGGTT
3' ss Score
10.68
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GTACTTTGGAGCCCCACTTGTCAGGCTTGCTGTGGACAGCTATGCTGATTTCTCTGGCTATAGTCATTGCTCTTCCTAAGCCCCACGGCATCCGAGCCTTAATAGCTTCTACAATATTACGACTAATATTTTCAGTTGGTTTACAACCTACTTTATTTCTTCTGGGTGCATTCAAC
Seq A exon
GTTTGTAATAAAATCATTTTTCTGATGAGTTTTGTGGGTAACTGTGGGACCTTCACTAGAGGATACAAGGCCATGATCATGGACGTAGAATTTCTGTATCATCTGCTGTACCTCCTGATCTGTGCTCTGGGGCTCTTTGTACACGAATTCTTCTATAGTTTGCTG
Seq C2 exon
CTCTTTGACTTGGTGTACCGAGAGGAGACCTTGCTGAACGTCATCAAGAGTGTCACCCGCAATGGGCGCTCCATCATCCTGACCGCTGTGCTCGCGCTCATCCTCGTGTACCTGTTCTCCATAGTGGGGTACCTGTTCTTCAAAGATGACTTTATCCTGGAAGTAGACAAGCTCCCCAATGAAACGTTATTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(10.4=45.8)
A:
PF0052026=Ion_trans=FE(20.8=100)
C2:
PF0052026=Ion_trans=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTCAGGCTTGCTGTGGAC
R:
ACAGCGGTCAGGATGATGGAG
Band lengths:
249-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]