RnoEX0045405 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140536321-140546601:+
Coord C1 exon
chr4:140536321-140536496
Coord A exon
chr4:140541691-140541855
Coord C2 exon
chr4:140546406-140546601
Length
165 bp
Sequences
Splice sites
3' ss Seq
CCGCCACCGTCTGTTCTCAGGTC
3' ss Score
9.94
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GAACACTAGAGCCGCACTGGTCCGGCCTCCTGTGGACAGCCATGCTCATCTCTCTGGCAATTGTCATTGCGCTGCCCAAGCCCCATGGCATCCGGGCCTTAATTGCTTCTACAATCCTACGACTGATATTTTCAGTTGGATTACAGCCCACACTGTTTCTGCTGGGAGCTTTCAAT
Seq A exon
GTCTGCAATAAAATCATCTTCCTGATGAGCTTTGTGGGCAACTGTGGGACCTTCACCAGAGGCTACCGAGCCATGGTTCTGGACGTTGAGTTCCTCTATCATTTGCTGTATCTACTGATCTGTGCCATGGGCCTCTTCGTACATGAGTTTTTCTATAGTTTGCTG
Seq C2 exon
CTTTTTGATTTAGTGTACAGAGAGGAGACTTTGCTTAATGTCATTAAAAGTGTCACCCGCAATGGACGGTCCATCATCTTGACAGCGGTCCTGGCTCTGATTCTGGTTTACCTGTTCTCAATTGTGGGCTACCTGTTCTTCAAGGATGACTTTATCTTGGAAGTAGACAGGTTGCCCAATGAGACAGCTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'89-93,'89-91,90-93
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(10.9=47.5)
A:
PF0052026=Ion_trans=FE(21.0=100)
C2:
PF0052026=Ion_trans=FE(25.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAGCCATGCTCATCTCT
R:
ACCAGAATCAGAGCCAGGACC
Band lengths:
251-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]