DreEX6092768 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35551734-35555759:-
Coord C1 exon
chr11:35555540-35555759
Coord A exon
chr11:35552476-35552640
Coord C2 exon
chr11:35551734-35551923
Length
165 bp
Sequences
Splice sites
3' ss Seq
AACTTTGCTGTTGTTTTCAGGTG
3' ss Score
10.67
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
CCAGCTTGACTGATGGCAGTGAAATGTGTTTATTTTCTCCTTAGGCACTCTGGAGCCGCATCTCTCCGCTCTCCTCTGGGCGGCCATGCTGGTTTCTCTGGCTATAGTGATTGTACTGCCTCAGCCGCACGGCATTCGGGCCCTCATCGCTTCCACCATCTTACGCCTCATCTTTTCGGTCGGCCTGGAGCCCACCCTCTTCCTCCTTGGGGCTTTTAAT
Seq A exon
GTGGGCAATAAAGTGATCTTCCTAATGAGTTTTGTGGGCAATCGGGGCACGTTCACGAGAGGATACAAGGCCATGATCATGGACGTGGAGTTCCTGTATCATCTGCTGTACCTCATCATATGCAGCCTTGGGGTCTTCGTTCACGTCTTCTTCTATAGTTTACTT
Seq C2 exon
CTCTTCGACCTGATCTACCGGGAGGAGACGCTGTTGAACGTCATCAAAAGCGTGACCAGGAACGGGCGCTCCATCGTGCTGACCGCTGTTCTGGCTCTCATCCTGGTCTACCTCTTCTCCATCGTCGGATACATCATCTTTAAGGATGACTTTATCCTGACTGTGGACAGGATATCCAATAAGACTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'64-62,'64-61,65-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(10.3=44.1)
A:
PF0052026=Ion_trans=FE(21.3=100)
C2:
PF0052026=Ion_trans=FE(24.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTGTACTGCCTCAGCCG
R:
ATCCGACGATGGAGAAGAGGT
Band lengths:
244-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]