BtaEX6094418 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44363508-44367152:+
Coord C1 exon
chr22:44363508-44363696
Coord A exon
chr22:44365489-44365592
Coord C2 exon
chr22:44366948-44367152
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTCAAATTTTATTCTCTTAGCTA
3' ss Score
4.92
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
AAACTTCCTTTTACTCAACACCCTGAGATATTTGGATTACATGAAAATGTTGATATCTCCAAAGATCTTCAACAAACGAAAGTCCTCTTTGAGTCATTGCTCCTCACCCAAGGAGGCTCCAAACAAACAGGATCCTCAGGAAGCACTGACCAGATTCTACTAGAAATTACCAAAGATATTCTCAACAAG
Seq A exon
CTACCAAGTGACTTTGACATTGAATCAGCACTGCTCAAGTATCCTGTGAGATATGAAGAGAGCATGAATACTGTGTTAGTGCAAGAAATGGAAAGATTTAACAA
Seq C2 exon
CTTAATTAAAACTATACGCAACACTCTACGGGACCTTGAAAAAGCTATTAGGGGTGTGGTCGTGATGGATTCTGCGTTGGAGGCACTGTCTGGCAGTCTGCTTGTTGGAAAGGTTCCAGAAATATGGGCGCAACGCTCATACCCAAGTCTTAAACCCCTAGGAAGTTACATCACAGATTTTCTAGCCCGGCTGAACTTTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-'75-81,'75-80,77-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.7=100)
A:
PF0302810=Dynein_heavy=FE(4.8=100)
C2:
PF0302810=Dynein_heavy=FE(9.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATTGCTCCTCACCCAAGG
R:
AGACTTGGGTATGAGCGTTGC
Band lengths:
247-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]