MmuEX6040080 @ mm10
Exon Skipping
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26877901-26884257:+
Coord C1 exon
chr14:26877901-26878089
Coord A exon
chr14:26879672-26879775
Coord C2 exon
chr14:26884053-26884257
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTCAGCATATGTTCTTTCAGCTC
3' ss Score
7.38
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AAACTTCCGTTTACTCAAGAGCCTGAAATATTCGGATTACACGAAAATGTTGACATCTCCAAAGATCTTCAACAAACGAAAGTCCTTTTTGAGTCCTTGCTCCTAACCCAGGGTGGCGCCAAACAGACAGGCTCCTCAGGAAGCACTGACCAGGTCCTGTTAGAAATTACTGAAGATATCCTCACACAG
Seq A exon
CTCCCAAATGATTTTGACATTGAAGCAGCACTGAAGAATTATCCTGTGAGGTACGAAGAGAGCATGAACACTGTGTTAGTGCAGGAAATGGAACGGTTTAACAA
Seq C2 exon
CTTAATTAGAACCATACGCAATACTCTACGGGACCTCAAGAAGGCTATTAAAGGCTTGGTTGTGATGGACTCTGCATTGGAAGCACTCTCTGGCAGTTTGCTTATTGGAAAAGTTCCCGAAATGTGGGCAAAACGATCGTACCCAAGTCTGAAGCCCCTTGGAAGTTACATCACAGATTTCCTGGCCCGGCTGAAGTTTTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'67-76,'67-74,73-76=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.7=100)
A:
PF0302810=Dynein_heavy=FE(4.8=100)
C2:
PF0302810=Dynein_heavy=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTGACCAGGTCCTGTTA
R:
TCTAAAAACTTCAGCCGGGCC
Band lengths:
252-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types