HsaEX6056802 @ hg19
Exon Skipping
Gene
ENSG00000174844 | DNAH12
Description
dynein, axonemal, heavy chain 12 [Source:HGNC Symbol;Acc:2943]
Coordinates
chr3:57335763-57343882:-
Coord C1 exon
chr3:57343694-57343882
Coord A exon
chr3:57343179-57343282
Coord C2 exon
chr3:57335763-57335967
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTCAAAATCTATTCTTTTAGCTC
3' ss Score
6.59
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
AAACTTCCATTTACTCAACACCCTGAGATATTTGGATTACATGAAAACGTTGACATCTCCAAGGATCTTCAACAAACAAAAACCCTCTTTGAGTCCTTGCTCCTCACCCAGGGAGGCTCCAAACAGACAGGAGCCTCAGGAAGTACTGATCAGATTCTGTTAGAAATTACCAAAGATATCCTCAACAAG
Seq A exon
CTCCCTAGTGATTTCGACATTGAAATGGCACTACGGAAGTATCCTGTGAGATATGAAGAAAGCATGAATACTGTGTTAGTACAAGAAATGGAAAGATTTAACAA
Seq C2 exon
TTTAATTATAACTATACGTAACACTCTACGGGACCTTGAAAAAGCTATTAAGGGTGTGGTTGTGATGGATTCTGCATTGGAGGCACTCTCCGGTAGCTTACTTGTTGGAAAGGTTCCAGAAATATGGGCCAAACGTTCATACCCAAGCCTTAAGCCCCTGGGAAGTTACATCACAGATTTCCTAGCCCGGTTGAACTTTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844-'58-60,'58-58,59-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(15.2=100)
A:
PF0302810=Dynein_heavy=FE(8.4=100)
C2:
PF0302810=Dynein_heavy=FE(16.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAACAGACAGGAGCCTCA
R:
TGATGTAACTTCCCAGGGGCT
Band lengths:
245-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)