RnoEX6054474 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2521301-2527951:+
Coord C1 exon
chr16:2521301-2521489
Coord A exon
chr16:2523464-2523567
Coord C2 exon
chr16:2527747-2527951
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTCAGCATCTGTTCTTTCAGCTC
3' ss Score
7.42
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AAACTTCCGTTTACTCAGGAACCCGAGATATTTGGATTACATGAAAATGTTGATATCTCCAAAGATCTTCAGCAAACGAAACTCCTTTTTGAGTCCTTGCTCCTCACCCAGGGTGGCGTCAAGCAGACAGGCTCCTCGGGAAGCACTGACCAGATCCTGTTAGAAATTACTGAGGATATCCTCACACAG
Seq A exon
CTCCCAAACGATTTTGACATTGAAGCAGCACTAAGGAGTTATCCTGTGAGGTACGAAGAGAGCATGAATACTGTGTTAGTGCAAGAAATGGAACGCTTCAACAA
Seq C2 exon
TTTAATTATAACTATCCGTAATACTCTGCGGGACCTCAAAAAGGCGATTAAAGGTGTAGTTGTGATGGACTCTGCATTGGAAGCACTTTCTGGCAGCTTGCTTATTGGAAAGGTTCCAGAAATGTGGGCACAGCGATCGTACCCAAGTCTGAAGCCCCTTGGAAGTTACATCACAGATTTCCTGACCCGGCTGAAGTTTCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'80-85,'80-82,82-85=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.7=100)
A:
PF0302810=Dynein_heavy=FE(4.8=100)
C2:
PF0302810=Dynein_heavy=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGCACTGACCAGATCCT
R:
CTTCAGCCGGGTCAGGAAATC
Band lengths:
248-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]