GgaEX0007807 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8641840-8643570:-
Coord C1 exon
chr12:8643382-8643570
Coord A exon
chr12:8642769-8642872
Coord C2 exon
chr12:8641840-8642044
Length
104 bp
Sequences
Splice sites
3' ss Seq
AAACATGTTGATATTTGCAGCTT
3' ss Score
4.64
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
AGTCTTCCCTTTAGTCAGCACCCAGAGGTATTTGGTTTGCATGAAAATGTGGATATTTCAAAAGATCTTCAGCAAACTAAGATCCTCTTTGAATCTCTGCTTTTAACACAAGGAGGAGACATTCAGGGAACTTCTTCTGGAGGTGGTGACAGCACTCTTTATGAAATTGCAGATGACATTCTCAGCAAG
Seq A exon
CTTCCAAATGATTTTGACATTGAAAGTTGCCTAGCTAAATATCCTGTGAGGTATGAAGAGAGTATGAACACTGTGTTGGTGCAAGAAATGGAAAGATTTAACAA
Seq C2 exon
CTTGCTCCAAACTATTCGTATTACACTGACTAACTTGAAGAAAGCCATTAAAGGTTTGGTTGTTATGGATGCTGAACTGGAAGCTCTGTGTGGCAGTCTGCTTATTGGAAAAGTTCCTGAGAATTGGGCTAAACAGTCCTACCCTAGTCTAAAGCCACTAGGGAGCTATATCCTTGATTTCCTACAGAGGCTGAAATTTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'78-86,'78-85,79-86
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.7=100)
A:
PF0302810=Dynein_heavy=FE(4.8=100)
C2:
PF0302810=Dynein_heavy=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAGGTATTTGGTTTGCA
R:
GAGCTTCCAGTTCAGCATCCA
Band lengths:
255-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]