GgaEX0007806 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8642769-8644230:-
Coord C1 exon
chr12:8643997-8644230
Coord A exon
chr12:8643382-8643570
Coord C2 exon
chr12:8642769-8642872
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTGCTGTATTTTGCCCTAGAGT
3' ss Score
8.75
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TTATTCATAAATGAATATCAGCATGTTCCATTTGAAGCAGTATCTTACCTGACTGGTGAGTGCAATTATGGAGGTCGAGTGACAGATGACTGGGACAGACGTTTACTGCTGACAGTGCTGGATGACTTTTATAATCCTGAAATAATTGAAAATCCTCATTACACTTTCTCTCCCAGTGGAAACTATTATGCTCCTCCAAAAGGCACGTACGAGGACTACATTGAATTTATTAAG
Seq A exon
AGTCTTCCCTTTAGTCAGCACCCAGAGGTATTTGGTTTGCATGAAAATGTGGATATTTCAAAAGATCTTCAGCAAACTAAGATCCTCTTTGAATCTCTGCTTTTAACACAAGGAGGAGACATTCAGGGAACTTCTTCTGGAGGTGGTGACAGCACTCTTTATGAAATTGCAGATGACATTCTCAGCAAG
Seq C2 exon
CTTCCAAATGATTTTGACATTGAAAGTTGCCTAGCTAAATATCCTGTGAGGTATGAAGAGAGTATGAACACTGTGTTGGTGCAAGAAATGGAAAGATTTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.8=100)
A:
PF0302810=Dynein_heavy=FE(8.7=100)
C2:
PF0302810=Dynein_heavy=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATTATGGAGGTCGAGTGAC
R:
CTTGCACCAACACAGTGTTCA
Band lengths:
258-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]