MmuEX6040081 @ mm10
Exon Skipping
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26876769-26879775:+
Coord C1 exon
chr14:26876769-26877002
Coord A exon
chr14:26877901-26878089
Coord C2 exon
chr14:26879672-26879775
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGACCCACATCTTCTCCTAGAAA
3' ss Score
6.17
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
TTGTTCATAAACGAATATGACACAATCCCATTCGAAGCTATCTCCTACCTGACTGGGGAGTGTAACTACGGAGGAAGAGTGACAGATGACTGGGACAGGCGCCTCCTGTTGACCATGCTAGCTGACTTTTACAACTCATTCATCATTGAAAACCCTCACTACAAGTTCTCGCCCAGTGGAAACTATTATGCGCCTCCCAAAGGCACTTATGATGACTACATTGAATTTATTAAG
Seq A exon
AAACTTCCGTTTACTCAAGAGCCTGAAATATTCGGATTACACGAAAATGTTGACATCTCCAAAGATCTTCAACAAACGAAAGTCCTTTTTGAGTCCTTGCTCCTAACCCAGGGTGGCGCCAAACAGACAGGCTCCTCAGGAAGCACTGACCAGGTCCTGTTAGAAATTACTGAAGATATCCTCACACAG
Seq C2 exon
CTCCCAAATGATTTTGACATTGAAGCAGCACTGAAGAATTATCCTGTGAGGTACGAAGAGAGCATGAACACTGTGTTAGTGCAGGAAATGGAACGGTTTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.8=100)
A:
PF0302810=Dynein_heavy=FE(8.7=100)
C2:
PF0302810=Dynein_heavy=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTACCTGACTGGGGAGTG
R:
GCTCTCTTCGTACCTCACAGG
Band lengths:
256-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types