MmuEX6040081 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27689955-27692961:+
Coord C1 exon
chr14:27689955-27690188
Coord A exon
chr14:27691087-27691275
Coord C2 exon
chr14:27692858-27692961
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGACCCACATCTTCTCCTAGAAA
3' ss Score
6.17
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
TTGTTCATAAACGAATATGACACAATCCCATTCGAAGCTATCTCCTACCTGACTGGGGAGTGTAACTACGGAGGAAGAGTGACAGATGACTGGGACAGGCGCCTCCTGTTGACCATGCTAGCTGACTTTTACAACTCATTCATCATTGAAAACCCTCACTACAAGTTCTCGCCCAGTGGAAACTATTATGCGCCTCCCAAAGGCACTTATGATGACTACATTGAATTTATTAAG
Seq A exon
AAACTTCCGTTTACTCAAGAGCCTGAAATATTCGGATTACACGAAAATGTTGACATCTCCAAAGATCTTCAACAAACGAAAGTCCTTTTTGAGTCCTTGCTCCTAACCCAGGGTGGCGCCAAACAGACAGGCTCCTCAGGAAGCACTGACCAGGTCCTGTTAGAAATTACTGAAGATATCCTCACACAG
Seq C2 exon
CTCCCAAATGATTTTGACATTGAAGCAGCACTGAAGAATTATCCTGTGAGGTACGAAGAGAGCATGAACACTGTGTTAGTGCAGGAAATGGAACGGTTTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'62-65,'62-64,63-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.8=100)
A:
PF0302810=Dynein_heavy=FE(8.7=100)
C2:
PF0302810=Dynein_heavy=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTACCTGACTGGGGAGTG
R:
GCTCTCTTCGTACCTCACAGG
Band lengths:
256-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: