GgaEX0007806 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr12:8890147-8891608:-
Coord C1 exon
chr12:8891375-8891608
Coord A exon
chr12:8890760-8890948
Coord C2 exon
chr12:8890147-8890250
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTGCTGTATTTTGCCCTAGAGT
3' ss Score
8.75
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TTATTCATAAATGAATATCAGCATGTTCCATTTGAAGCAGTATCTTACCTGACTGGTGAGTGCAATTATGGAGGTCGAGTGACAGATGACTGGGACAGACGTTTACTGCTGACAGTGCTGGATGACTTTTATAATCCTGAAATAATTGAAAATCCTCATTACACTTTCTCTCCCAGTGGAAACTATTATGCTCCTCCAAAAGGCACGTACGAGGACTACATTGAATTTATTAAG
Seq A exon
AGTCTTCCCTTTAGTCAGCACCCAGAGGTATTTGGTTTGCATGAAAATGTGGATATTTCAAAAGATCTTCAGCAAACTAAGATCCTCTTTGAATCTCTGCTTTTAACACAAGGAGGAGACATTCAGGGAACTTCTTCTGGAGGTGGTGACAGCACTCTTTATGAAATTGCAGATGACATTCTCAGCAAG
Seq C2 exon
CTTCCAAATGATTTTGACATTGAAAGTTGCCTAGCTAAATATCCTGTGAGGTATGAAGAGAGTATGAACACTGTGTTGGTGCAAGAAATGGAAAGATTTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.8=100)
A:
PF0302810=Dynein_heavy=FE(8.7=100)
C2:
PF0302810=Dynein_heavy=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATTATGGAGGTCGAGTGAC
R:
CTTGCACCAACACAGTGTTCA
Band lengths:
258-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]