DreEX6079852 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19584028-19586659:-
Coord C1 exon
chr23:19586426-19586659
Coord A exon
chr23:19584231-19584419
Coord C2 exon
chr23:19584028-19584131
Length
189 bp
Sequences
Splice sites
3' ss Seq
AAACTGTGTATGCTCCACAGAAA
3' ss Score
6.78
5' ss Seq
AAAGTAACT
5' ss Score
4.33
Exon sequences
Seq C1 exon
CTCTTTGTGAATGAGTACCAGGAAGTTCCCTTTGAGGCCATCACATATCTCACAGGAGAGTGTAACTATGGAGGACGTGTAACAGATGACTGGGACCGTCGCCTCCTCATGACGATCCTCGCTGACTTCTACAACAAAGACGTTATTGACCACCCACGCTACTCCTTCTCCCCTAGTGGCAAATATCACGCACCTCCAAAGTCCATCTACGAAGACTATGTAGAGTTTATCAAG
Seq A exon
AAACTCCCATTTACCCAGCATCCCGAGGTGTTTGGCATGCATGAGAACGTGGACATCTCCAAAGACCTTCAACAGACAAAACTCCTGTTCGATTCCCTCCTTCTGACGCAAGGTGGAGGCTCAAAGGGCGGAGGAGGCTCTGGCGGAGACAGCACCCTTCTGGACATTGCTAATGACATCCTTTCTAAA
Seq C2 exon
CTTCCAGGTAACTTTGACATCGAGTCTGCCCTCGTCAAGTTTCCTGTGTGTTATGAGGAGAGCATGAATACGGTGCTCGTGCAGGAGATGCAGCGCTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'72-71,'72-70,73-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.063 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.3=100)
A:
PF0302810=Dynein_heavy=FE(9.1=100)
C2:
PF0302810=Dynein_heavy=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCTTTGAGGCCATCACA
R:
GGAAACTTGACGAGGGCAGAC
Band lengths:
254-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]