BtaEX6094449 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44260803-44262068:+
Coord C1 exon
chr22:44260803-44261042
Coord A exon
chr22:44261379-44261624
Coord C2 exon
chr22:44261949-44262068
Length
246 bp
Sequences
Splice sites
3' ss Seq
TCACTTGTTTTATGCTTCAGGTG
3' ss Score
10.22
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
TTTTTTAAAGGATTGGCTTCTTCTGGTGCTTGGGCTTGCTTTGATGAATTTAATCGAATTGAGTTGGAAGTGCTGTCAGTGGTAGCTCAACAGATCCTTTGCATTCAGAGAGCCATTCAACAGAAGCTGGAAGTGTTTACTTTTGAAGGGACAGAACTTAAGCTCAATCCAAACTGTTTCGTAGCTATTACCATGAACCCTGGCTATGCAGGACGTTCTGAATTACCAGATAATCTTAAG
Seq A exon
GTGCTTTTCAGAACAGTGGCTATGATGGTTCCAAACTATGCCCTCATAGCAGAAATCTCCCTCTACTCCTACGGATTTCTGAATGCAAAACCTCTGTCTGTGAAGATAGTAATGACCTATAGGCTCTGCTCAGAGCAGCTCTCATCACAGTTTCATTATGACTATGGAATGCGAGCAGTAAAAGCAGTTTTAATAGCTGCTGGAAACCTAAAACTAAAATTTCCAAATGAAAATGAAGATATCCTT
Seq C2 exon
CTTCTTCGATCAATTAAAGATGTAAATGAACCAAAGTTTTTATCACATGATATACCCTTATTTAATGGAATAACTAGTGACTTATTTCCTGGTGTTAAACTTCCTGAAGCCGACTATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-'23-21,'23-20,24-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(34.2=100)
A:
PF127742=AAA_6=PD(32.0=90.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGCTGTCAGTGGTAGC
R:
TGATAGTCGGCTTCAGGAAGT
Band lengths:
294-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]