GgaEX1001308 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8678825-8680717:-
Coord C1 exon
chr12:8680478-8680717
Coord A exon
chr12:8679270-8679515
Coord C2 exon
chr12:8678825-8678944
Length
246 bp
Sequences
Splice sites
3' ss Seq
TCTTTGGGTATGTGTTTCAGGTT
3' ss Score
8.82
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTTTTCAAGGGTTTGGCTTCATCGGGTGCATGGGCGTGTTTTGATGAATTCAATCGCATTGAACTGGAAGTTTTGTCTGTTGTGGCCCAGCAGATCCTTTGCATCCAGAGAGCCATACAGGCAAAACTAGAGAAGTTTGTTTTTGAAGGAACTGAACTGAATCTTAACCCCAACTGTTTTGTAGCTATTACTATGAATCCAGGTTACGCAGGACGTTCTGAACTTCCAGATAATCTGAAG
Seq A exon
GTTCTGTTCCGAACAGTAGCCATGATGGTTCCTAACTATGCTTTGATAGCAGAAATTTCTCTCTATTCATATGGATTTCTGAATGCAAAGTCACTATCAGTGAAGATAGTAATGACCTACAGGCTTTGTTCAGAGCAGCTTTCTTCTCAGTATCACTATGACTACGGTATGCGAGCAGTTAAAGCTGTGTTGGTGGCTGCAGGGAATTTAAAACTGAAATTTCCAGAGGAAGATGAAGATGTATTG
Seq C2 exon
CTTCTTAGATCAATTAAGGATGTGAATGAGCCCAAATTTTTGTCATGTGATATACCTCTCTTCATGGGTATAACTAGCGATTTATTTCCTGGAATCAAACTTCCTGATGCAGACTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(34.2=100)
A:
PF127742=AAA_6=PD(32.0=90.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCATGGGCGTGTTTTGATG
R:
CGCTAGTTATACCCATGAAGAGAGG
Band lengths:
294-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]