MmuEX6040111 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27586112-27587523:+
Coord C1 exon
chr14:27586112-27586351
Coord A exon
chr14:27586782-27587027
Coord C2 exon
chr14:27587404-27587523
Length
246 bp
Sequences
Splice sites
3' ss Seq
TCATTTATTATATGCCTCAGGTT
3' ss Score
6.58
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TTTTTTAAAGGACTGGCTTCTTCGGGTGCTTGGGCTTGCTTTGATGAGTTCAATCGAATTGAACTGGAAGTGCTATCTGTGGTGGCGCAGCAGATTCTTTGCATTCAGCGAGCTATCCAGCAGAAACTAGAAGCGTTTGTTTTTGAAGGGACAGAACTAAGGCTCAATCCAAACTGTTTTGTAGCTATTACCATGAATCCTGGGTATGCAGGACGTTCTGAATTGCCAGACAACCTCAAG
Seq A exon
GTTCTTTTCAGAACAGTAGCTATGATGGTGCCAAACTATGCCCTCATCGCAGAAATCTCCCTCTACTCCTATGGATTTCTGAATGCAAAACCTCTGTCTGTGAAGATAGTGATGACCTACAGGCTGTGCTCCGAGCAGCTGTCCTCACAGTTTCATTATGACTATGGAATGCGAGCAGTGAAAGCAGTGTTAGTGGCAGCTGGAAATCTAAAATTAAAATACCCCAATGAAAATGAGGACATACTG
Seq C2 exon
CTTCTTCGATCAATTAAAGATGTAAATGAACCAAAGTTTCTATCACATGACATACCCTTATTTAATGGAATAACTAGTGACTTATTTCCTGGTATTAAGCTTCCTGAGGCCGACTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'27-29,'27-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(34.2=100)
A:
PF127742=AAA_6=PD(32.0=90.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGCTATCTGTGGTGGC
R:
GTAGTCGGCCTCAGGAAGCTT
Band lengths:
292-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: