DreEX6079821 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19611846-19612609:-
Coord C1 exon
chr23:19612370-19612609
Coord A exon
chr23:19612045-19612290
Coord C2 exon
chr23:19611846-19611965
Length
246 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTAATGTCACTTAGGTC
3' ss Score
8.46
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
TTCTTCAAGGGATTGGCTTCTTCTGGTGCCTGGGCCTGTTTTGACGAATTCAATCGGATTGAGTTGGAGGTGCTGTCTGTGGTGGCTCAGCAGATTCTGTGTATTCAGAGAGCCATTGAAATGAGACTTGAGTATTTTGACTTTGAGGGCACAGAGTTGCGCCTTAACCCCAACTGTTTTGTCGCCATCACCATGAACCCTGGATATGCTGGCCGATCTGAACTTCCTGACAATCTAAAG
Seq A exon
GTCTTGTTTAGAACAGTAGCCATGATGGTGCCCAATTATGCACTGATTGCTGAGATCTCCTTATATTCATATGGCTTCCTCAATGCTAAGCCTCTCTCAGTGAAGATTGTGATGACCTACAGGCTGTGCTCAGAGCAACTTTCCTCTCAGTTCCACTATGACTATGGCATGAGAGCTGTTAAAGCAGTGCTGGTGGCTGCTGGGAACCTCAAACTCAAATTTCCAGATGAAAATGAGGATATACTT
Seq C2 exon
CTTCTCCGCTCCATCAAGGATGTCAATGAGCCCAAGTTTCTCTCTCATGATATCCCTCTTTTCAATGGAATTACCAGTGACCTTTTTCCAGGAATTTCTCTACCTGTGGCGGATTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(34.2=100)
A:
PF127742=AAA_6=PD(32.0=90.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGAGGTGCTGTCTGTG
R:
CCGCCACAGGTAGAGAAATTCC
Band lengths:
292-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]