RnoEX6054499 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2437399-2438721:+
Coord C1 exon
chr16:2437399-2437638
Coord A exon
chr16:2438084-2438329
Coord C2 exon
chr16:2438602-2438721
Length
246 bp
Sequences
Splice sites
3' ss Seq
GCATTTATCATATGCCTCAGGTT
3' ss Score
6.39
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TTTTTTAAAGGCCTGGCTTCTTCAGGCGCCTGGGCTTGCTTTGATGAATTTAACCGCATTGAACTGGAAGTGCTGTCCGTGGTGGCACAGCAGATCCTTTGCATCCAGAGAGCTATTCAGCAGAAACTGGAAGTGTTTGTCTTTGAAGGGACAGAACTTAGGCTCAATCCAAACTGTTTTGTGGCCATCACCATGAATCCTGGCTATGCAGGACGTTCTGAATTGCCAGACAACCTCAAG
Seq A exon
GTTCTTTTCAGAACAGTAGCTATGATGGTTCCAAACTACGCCCTCATCGCAGAAATCTCCCTTTACTCCTATGGGTTTCTAAACGCAAAGCCTCTGTCTGTGAAGATAGTGATGACCTACCGGCTGTGCTCCGAGCAGCTGTCCTCGCAGTTCCATTACGACTATGGGATGCGAGCAGTGAAAGCCGTGTTAGTGGCAGCTGGGAACCTAAAATTGAAATACCCCAATGAAAACGAGGACATACTG
Seq C2 exon
CTTCTTCGATCAATTAAAGATGTAAATGAACCAAAGTTTCTCTCACACGACATACCTTTATTTAATGGAATAACTAGTGATTTATTTCCTGGTATTAAGCTTCCTGAAGCTGACTACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'31-37,'31-36,32-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(34.2=100)
A:
PF127742=AAA_6=PD(32.0=90.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACTGGAAGTGCTGTCCG
R:
TTGGTAGTCAGCTTCAGGAAG
Band lengths:
302-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]