BtaEX6094565 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46538497-46542869:-
Coord C1 exon
chr22:46542794-46542869
Coord A exon
chr22:46540199-46540251
Coord C2 exon
chr22:46538497-46538552
Length
53 bp
Sequences
Splice sites
3' ss Seq
AACCGAATTCTTCTCTGCAGCCT
3' ss Score
6.76
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
AATTACCCTTTATGACTATCAAGCCATGTGCAGGGCCAACAAGGAGAGCAGTGACGGCGCCCACGGTCTTCTGGAT
Seq A exon
CCTTATAATGCCTTCCTTGCTGCAGTGAAATGGATAATGACAGAACTTGTCTT
Seq C2 exon
GTTTCTGGTGGAATTTAACCTTTGCAGTTGGTGGCACTCAGATATGACAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117-'33-30,'33-28,34-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTACCCTTTATGACTATCAAGCCA
R:
CTTTAGCTGTCATATCTGAGTGCCA
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]